This directory contains reciprocal-best netted chains for mm10-panTro5.

 - mm10.panTro5.rbest.net.gz: mm10-referenced recip.best net to panTro5.
 - mm10.panTro5.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to panTro5 through the recip.best net.

 - panTro5.mm10.rbest.net.gz: panTro5-referenced recip.best net.
 - panTro5.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm10.panTro5.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2016-08-04 17:23    -   
      md5sum.txt                  2016-08-04 07:09  244   
      mm10.panTro5.rbest.net.gz   2016-08-04 07:09   92M  
      mm10.panTro5.rbest.chain.gz 2016-08-04 07:07   65M  
      panTro5.mm10.rbest.chain.gz 2016-08-04 07:05   65M  
      panTro5.mm10.rbest.net.gz   2016-08-04 07:03  141M