This directory contains reciprocal-best netted chains for mm10-ornAna1.
- mm10.ornAna1.rbest.net.gz: mm10-referenced recip.best net to ornAna1.
- mm10.ornAna1.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from mm10 to ornAna1 through the recip.best net.
- ornAna1.mm10.rbest.net.gz: ornAna1-referenced recip.best net.
- ornAna1.mm10.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/*.mm10.ornAna1.net.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
ornAna1.mm10.rbest.net.gz 2020-11-17 12:45 18M
ornAna1.mm10.rbest.chain.gz 2020-11-17 12:46 10M
mm10.ornAna1.rbest.chain.gz 2020-11-17 12:46 10M
mm10.ornAna1.rbest.net.gz 2020-11-17 12:46 16M
md5sum.txt 2020-11-17 12:46 244
axtRBestNet/ 2020-11-17 15:59 -