This directory contains reciprocal-best netted chains for mm10-manPen1.

 - mm10.manPen1.rbest.net.gz: mm10-referenced recip.best net to manPen1.
 - mm10.manPen1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to manPen1 through the recip.best net.

 - manPen1.mm10.rbest.net.gz: manPen1-referenced recip.best net.
 - manPen1.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm10.manPen1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      mm10.manPen1.rbest.net.gz   2017-03-16 06:57   84M  
      mm10.manPen1.rbest.chain.gz 2017-03-16 06:55   54M  
      md5sum.txt                  2017-03-16 06:57  244   
      manPen1.mm10.rbest.net.gz   2017-03-16 06:53  109M  
      manPen1.mm10.rbest.chain.gz 2017-03-16 06:54   54M  
      axtRBestNet/                2017-03-16 15:11    -