This directory contains reciprocal-best netted chains for mm10-aquChr2.

 - mm10.aquChr2.rbest.net.gz: mm10-referenced recip.best net to aquChr2.
 - mm10.aquChr2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to aquChr2 through the recip.best net.

 - aquChr2.mm10.rbest.net.gz: aquChr2-referenced recip.best net.
 - aquChr2.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm10.aquChr2.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      aquChr2.mm10.rbest.chain.gz 2017-03-16 22:12  6.6M  
      aquChr2.mm10.rbest.net.gz   2017-03-16 22:12   12M  
      axtRBestNet/                2017-03-17 01:28    -   
      md5sum.txt                  2017-03-16 22:12  244   
      mm10.aquChr2.rbest.chain.gz 2017-03-16 22:12  6.6M  
      mm10.aquChr2.rbest.net.gz   2017-03-16 22:12   12M