This directory contains reciprocal-best netted chains for calJac3-panTro5.
- calJac3.panTro5.rbest.net.gz: calJac3-referenced recip.best net to panTro5.
- calJac3.panTro5.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from calJac3 to panTro5 through the recip.best net.
- panTro5.calJac3.rbest.net.gz: panTro5-referenced recip.best net.
- panTro5.calJac3.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/calJac3.panTro5.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
panTro5.calJac3.rbest.net.gz 2017-08-08 21:27 108M
panTro5.calJac3.rbest.chain.gz 2017-08-08 21:28 56M
calJac3.panTro5.rbest.chain.gz 2017-08-08 21:29 56M
calJac3.panTro5.rbest.net.gz 2017-08-08 21:30 82M
md5sum.txt 2017-08-08 21:30 256
axtRBestNet/ 2017-08-09 13:02 -