[DIR] Parent Directory

This directory contains data generated by the Gingeras/Gis lab as part of the ENCODE project. Further information is available in the GIS DNA PET track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:

  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-01-03wgEncodeGisDnaPetGm12878F1kAln.bam.bai  6.5M  2009-04-03  dataType=DnaPet; cell=GM12878; subId=1520; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; grant=Gingeras; lab=GIS; fragSize=1k; view=Alignments; type=bai; tableName=wgEncodeGisDnaPetGm12878F1kAln; fileIndex=wgEncodeGisDnaPetGm12878F1kAln.bam.bai; origAssembly=hg18
      2010-01-03wgEncodeGisDnaPetGm12878F1kAln.bam  4.5G  2009-04-03  dataType=DnaPet; cell=GM12878; subId=1520; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; grant=Gingeras; lab=GIS; fragSize=1k; view=Alignments; type=bam; tableName=wgEncodeGisDnaPetGm12878F1kAln; fileIndex=wgEncodeGisDnaPetGm12878F1kAln.bam.bai; origAssembly=hg18
      2010-01-03wgEncodeGisDnaPetGm12878F5kAln.bam.bai  6.3M  2009-04-03  dataType=DnaPet; cell=GM12878; subId=1521; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; grant=Gingeras; lab=GIS; fragSize=5k; view=Alignments; type=bai; tableName=wgEncodeGisDnaPetGm12878F5kAln; fileIndex=wgEncodeGisDnaPetGm12878F5kAln.bam.bai; origAssembly=hg18
      2010-01-03wgEncodeGisDnaPetGm12878F5kAln.bam  3.8G  2009-04-03  dataType=DnaPet; cell=GM12878; subId=1521; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; grant=Gingeras; lab=GIS; fragSize=5k; view=Alignments; type=bam; tableName=wgEncodeGisDnaPetGm12878F5kAln; fileIndex=wgEncodeGisDnaPetGm12878F5kAln.bam.bai; origAssembly=hg18
      2009-12-11wgEncodeGisDnaPetGm12878F10kAln.bam.bai  7.8M  2009-03-11  dataType=DnaPet; cell=GM12878; subId=1852; dataVersion=post ENCODE June 2010 Freeze; dateResubmitted=2010-07-07; grant=Gingeras; lab=GIS; fragSize=10k; view=Alignments; type=bai; tableName=wgEncodeGisDnaPetGm12878F10kAln; fileIndex=wgEncodeGisDnaPetGm12878F10kAln.bam.bai; origAssembly=hg18
      2009-12-11wgEncodeGisDnaPetGm12878F10kAln.bam  13G  2009-03-11  dataType=DnaPet; cell=GM12878; subId=1852; dataVersion=post ENCODE June 2010 Freeze; dateResubmitted=2010-07-07; grant=Gingeras; lab=GIS; fragSize=10k; view=Alignments; type=bam; tableName=wgEncodeGisDnaPetGm12878F10kAln; fileIndex=wgEncodeGisDnaPetGm12878F10kAln.bam.bai; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm1287810kFasta3p.csfasta.gz  4.8G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Fasta3p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm1287810kFasta5p.csfasta.gz  4.9G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Fasta5p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm1287810kQual3p.csqual.gz  9.9G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Qual3p; type=csqual; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm1287810kQual5p.csqual.gz  9.9G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Qual5p; type=csqual; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm128781kFasta3p.csfasta.gz  3.4G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Fasta3p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm128781kFasta5p.csfasta.gz  3.5G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Fasta5p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm128781kQual3p.csqual.gz  7.0G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Qual3p; type=csqual; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm128781kQual5p.csqual.gz  7.0G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Qual5p; type=csqual; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm128785kFasta3p.csfasta.gz  2.8G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=5k; view=Fasta3p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm128785kFasta5p.csfasta.gz  3.2G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=5k; view=Fasta5p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm128785kQual3p.csqual.gz  5.7G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=5k; view=Qual3p; type=csqual; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetGm128785kQual5p.csqual.gz  6.4G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=5k; view=Qual5p; type=csqual; origAssembly=hg18
      2011-01-05wgEncodeGisDnaPetK56220kFasta3p.csfasta.gz  1.2G  2010-04-05  dataType=DnaPet; cell=K562; subId=1075; dataVersion=ENCODE June 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=20k; view=Fasta3p; type=csfasta; origAssembly=hg18
      2011-01-05wgEncodeGisDnaPetK56220kFasta5p.csfasta.gz  1.3G  2010-04-05  dataType=DnaPet; cell=K562; subId=1075; dataVersion=ENCODE June 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=20k; view=Fasta5p; type=csfasta; origAssembly=hg18
      2011-01-05wgEncodeGisDnaPetK56220kQual3p.csqual.gz  2.4G  2010-04-05  dataType=DnaPet; cell=K562; subId=1075; dataVersion=ENCODE June 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=20k; view=Qual3p; type=csqual; origAssembly=hg18
      2011-01-05wgEncodeGisDnaPetK56220kQual5p.csqual.gz  2.5G  2010-04-05  dataType=DnaPet; cell=K562; subId=1075; dataVersion=ENCODE June 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=20k; view=Qual5p; type=csqual; origAssembly=hg18
      2011-01-05wgEncodeGisDnaPetK562F20kAln.bam.bai  6.3M  2010-04-05  dataType=DnaPet; cell=K562; subId=1524; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; grant=Gingeras; lab=GIS; fragSize=20k; view=Alignments; type=bai; tableName=wgEncodeGisDnaPetK562F20kAln; fileIndex=wgEncodeGisDnaPetK562F20kAln.bam.bai; origAssembly=hg18
      2011-01-05wgEncodeGisDnaPetK562F20kAln.bam  2.8G  2010-04-05  dataType=DnaPet; cell=K562; subId=1524; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; grant=Gingeras; lab=GIS; fragSize=20k; view=Alignments; type=bam; tableName=wgEncodeGisDnaPetK562F20kAln; fileIndex=wgEncodeGisDnaPetK562F20kAln.bam.bai; origAssembly=hg18
      2009-12-11wgEncodeGisDnaPetK562F10kAln.bam.bai  6.6M  2009-03-11  dataType=DnaPet; cell=K562; subId=1853; dataVersion=post ENCODE June 2010 Freeze; dateResubmitted=2010-07-07; grant=Gingeras; lab=GIS; fragSize=10k; view=Alignments; type=bai; tableName=wgEncodeGisDnaPetK562F10kAln; fileIndex=wgEncodeGisDnaPetK562F10kAln.bam.bai; origAssembly=hg18
      2009-12-11wgEncodeGisDnaPetK562F10kAln.bam  5.8G  2009-03-11  dataType=DnaPet; cell=K562; subId=1853; dataVersion=post ENCODE June 2010 Freeze; dateResubmitted=2010-07-07; grant=Gingeras; lab=GIS; fragSize=10k; view=Alignments; type=bam; tableName=wgEncodeGisDnaPetK562F10kAln; fileIndex=wgEncodeGisDnaPetK562F10kAln.bam.bai; origAssembly=hg18
      2009-12-11wgEncodeGisDnaPetK562F1kAln.bam.bai  6.8M  2009-03-11  dataType=DnaPet; cell=K562; subId=1854; dataVersion=post ENCODE June 2010 Freeze; dateResubmitted=2010-07-07; grant=Gingeras; lab=GIS; fragSize=1k; view=Alignments; type=bai; tableName=wgEncodeGisDnaPetK562F1kAln; fileIndex=wgEncodeGisDnaPetK562F1kAln.bam.bai; origAssembly=hg18
      2009-12-11wgEncodeGisDnaPetK562F1kAln.bam  4.8G  2009-03-11  dataType=DnaPet; cell=K562; subId=1854; dataVersion=post ENCODE June 2010 Freeze; dateResubmitted=2010-07-07; grant=Gingeras; lab=GIS; fragSize=1k; view=Alignments; type=bam; tableName=wgEncodeGisDnaPetK562F1kAln; fileIndex=wgEncodeGisDnaPetK562F1kAln.bam.bai; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetK56210kFasta3p.csfasta.gz  2.2G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Fasta3p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetK56210kFasta5p.csfasta.gz  2.2G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Fasta5p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetRd1K56210kFastq.fastq.gz  2.2G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=FastqRd1; type=fastq; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetRd2K56210kFastq.fastq.gz  2.3G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=FastqRd2; type=fastq; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetK56210kQual3p.csqual.gz  4.5G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Qual3p; type=csqual; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetK56210kQual5p.csqual.gz  4.4G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Qual5p; type=csqual; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetK5621kFasta3p.csfasta.gz  1.3G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Fasta3p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetK5621kFasta5p.csfasta.gz  1.3G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Fasta5p; type=csfasta; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetRd1K5621kFastq.fastq.gz  1.9G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=FastqRd1; type=fastq; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetRd2K5621kFastq.fastq.gz  1.6G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=FastqRd2; type=fastq; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetK5621kQual3p.csqual.gz  2.5G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Qual3p; type=csqual; origAssembly=hg18
      2010-08-17wgEncodeGisDnaPetK5621kQual5p.csqual.gz  2.5G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Qual5p; type=csqual; origAssembly=hg18
    40 files