This directory contains reciprocal-best netted chains for ce11-dirImm1.

 - ce11.dirImm1.rbest.net.gz: ce11-referenced recip.best net to dirImm1.
 - ce11.dirImm1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from ce11 to dirImm1 through the recip.best net.

 - dirImm1.ce11.rbest.net.gz: dirImm1-referenced recip.best net.
 - dirImm1.ce11.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.ce11.dirImm1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2015-07-23 12:33    -   
      md5sum.txt                  2015-07-23 12:33  244   
      ce11.dirImm1.rbest.chain.gz 2015-07-23 12:33  430K  
      dirImm1.ce11.rbest.chain.gz 2015-07-23 12:33  430K  
      ce11.dirImm1.rbest.net.gz   2015-07-23 12:33  618K  
      dirImm1.ce11.rbest.net.gz   2015-07-23 12:33  706K